SNP Profiles matching OC 61/VEM

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
1._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
2._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
3._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
4._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
5._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
6._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
7._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
8._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
9._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
10._GC-05-040-1-40	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
11._GC-05-040-1-40	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
12._GC-05-040-1-40	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
13._GC-05-040-1-40	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
14._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
15._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
16._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
17._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
18._MARPER_45	TT	AA	GG	CT	-	AA	CC	-	CT	-	AA	AA	-	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
1._OC_61_[VEN]	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
2._OC_61_[VEN]	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
3._OC_61_[VEN]	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
4._OC_61_[VEN]	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
5._OC_61_[VEN]	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
6._OC_61_[VEN]	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
7._GC-05-039-1-39	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
8._GC-05-039-1-39	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
9._GC-05-039-1-39	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
10._GC-05-040-1-40	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
11._GC-05-040-1-40	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
12._GC-05-040-1-40	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
13._GC-05-040-1-40	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
14._OC_61_[VEN]	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
15._OC_61_[VEN]	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
16._GC-05-039-1-39	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
17._GC-05-039-1-39	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
18._MARPER_45	TT	AA	GG	-	CC	-	GT	GG	TT	-	CC	-	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
1._OC_61_[VEN]	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
2._OC_61_[VEN]	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
3._OC_61_[VEN]	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
4._OC_61_[VEN]	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
5._OC_61_[VEN]	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
6._OC_61_[VEN]	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
7._GC-05-039-1-39	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
8._GC-05-039-1-39	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
9._GC-05-039-1-39	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
10._GC-05-040-1-40	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
11._GC-05-040-1-40	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
12._GC-05-040-1-40	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
13._GC-05-040-1-40	AA	GG	AA	CC	AG	CG	AA	CC	TT	CC	TT	GG	X_X	X_X
14._OC_61_[VEN]	AA	GG	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
15._OC_61_[VEN]	AA	GG	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
16._GC-05-039-1-39	AA	GG	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
17._GC-05-039-1-39	AA	GG	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
18._MARPER_45	AG	GG	-	CT	AG	-	-	-	GT	-	AT	-	X_X	X_X

Input profile: OC_61_[VEN]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5140 4 > FP

Dapeng Zhang, 2016

1._OC_61_[VEN]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 5 > FP

Dapeng Zhang, 2016

2._OC_61_[VEN]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 4 > FP

Dapeng Zhang, 2016

3._OC_61_[VEN]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 3 > FP

Dapeng Zhang, 2016

4._OC_61_[VEN]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5140 5 > FP

Dapeng Zhang, 2016

5._OC_61_[VEN]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5140 3 > FP

Dapeng Zhang, 2016

6._OC_61_[VEN]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5140 1 > FP

Dapeng Zhang, 2016

7._OC_61_[VEN] GC-05-039-1-39

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

8._OC_61_[VEN] GC-05-039-1-39

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

9._OC_61_[VEN] GC-05-039-1-39

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

10._OC_61_[VEN] GC-05-040-1-40

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._OC_61_[VEN] GC-05-040-1-40

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

12._OC_61_[VEN] GC-05-040-1-40

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

13._OC_61_[VEN] GC-05-040-1-40

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

14._OC_61_[VEN]

98.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 1 > FP

Dapeng Zhang, 2016

15._OC_61_[VEN]

98.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._OC_61_[VEN] GC-05-039-1-39

98.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

17._OC_61_[VEN] GC-05-039-1-39

98.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

18._MARPER_45

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 251A

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25